elastix
navis.transforms.elastix.elastix_version
#
Get elastix version.
Source code in navis/transforms/elastix.py
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navis.transforms.elastix.find_elastixbin
#
Find directory with elastix binaries.
Source code in navis/transforms/elastix.py
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navis.transforms.elastix.requires_elastix
#
Check if elastix is available.
Source code in navis/transforms/elastix.py
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navis.transforms.elastix.setup_elastix
#
Set up to make elastix work from inside a Python session.
Briefly: elastix requires the LD_LIBRARY_PATH
(Linux) or LDY_LIBRARY_PATH
(OSX) environment variables to (also) point to the directory with the elastix lib
directory. For reasons unknown to me, these variables do not make it into the Python session. Hence, we have to set them here explicitly.
Above info is based on: https://github.com/jasper-tms/pytransformix
Source code in navis/transforms/elastix.py
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