Tutorials

General Tutorials#

These are some general introductory tutorials:

The Basics

Neuron Types

Lists of Neurons

Import / Export#

These tutorials will illustrate how to load and save your data:

Skeletons

Meshes

Dotprops

Pickling

Skeletons from light-level data

Plotting#

These tutorials will show you how to visualize your neurons:

Plotting Overview

Coloring

Neuron "Barcodes"

Neuron Topology

Fine-tuning Skeletons

Depth-coloring

Cortical Neurons

XKCD Style

Morphology#

These tutorials will show you how to analyse and manipulate your neurons' morphology:

Manipulate Morphology

Analyzing Neuron Morphology

Interfaces#

These tutorials cover interfaces between NAVis and external tools:

NEURON simulator

Visualize NEURON model

Blender 3D

Remote Data Sources#

These tutorials will show you how to load data from remote data sources:

neuPrint

Neuroglancer & CloudVolume

The MICrONS Datasets

Insect Brain DB

H01 Dataset

NBLAST#

These tutorials will teach you how to run NBLASTs to compare neuron morphology.

NBLAST

Custom score matrices

NBLAST against FlyCircuit

NBLAST using light-level data

Misc#

Multiprocessing

Transformations

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